PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 502aa    MW: 56396 Da    PI: 6.2278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026688.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.52.6e-1071384941374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL+ecA a+s ++l +a+++L +l +lasp+g +  +R++ayf++A+a+r+ +s+ ++++ l   ++       +  a+++f+ +sP++kf+h+t
  Pbr026688.1 138 LITLLFECAVAISIDNLPEAHRMLLELTQLASPYGpSCAERVVAYFAKAMASRVINSWLGISSPLVNYKS-------VHDAFQVFNTISPFIKFAHFT 228
                  5789*******************************9999***********************87766555.......4568999************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaIlea+++++rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g     s+e l etg++L++fA++lg++fef + +++++ +++ ++ +
  Pbr026688.1 229 SNQAILEAFHHHDRVHILDLDIMQGLQWPALFHILATRMEGPPHVRMTGMGT----SSEILLETGKQLSSFARRLGLSFEFLP-IVRKVGEVDASMVQ 321
                  ****************************************************....99*************************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v++gE+laV++    h+l+d +++  +     ++++ +l P+++++veq+++h s+sFl+rf+ +l+yys++fdsle+ lp+++ +r+kvE+ l+ re
  Pbr026688.1 322 VQRGETLAVHWLQ--HSLYDATGPDWK----AMRFIEELAPRIITLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLPSDNPNRHKVEHCLFYRE 412
                  ************9..999999999888....**********************.899***************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i n++a  g +r  +  ++++Wr  l++ + F +v +s + ++qa+l+l++++  +gy++ + +g++ lgWkd +L+++SaW+
  Pbr026688.1 413 INNILAIGGPARSGED-KFRQWRGELGArSEFVQVGMSGNSMAQAQLILNMFPpTHGYSLVQGDGTIRLGWKDTSLYVASAWT 494
                  ***********77665.5******998659****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.108112473IPR005202Transcription factor GRAS
PfamPF035148.9E-105138494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MADGIVNIIQ SHQPWINYPN PNVNDFQNNP NSDPKPVENR FINLERSELS LWVEHITKQL  60
IDDLPEPATA ANTAANDTLQ TSEDYFVPSS LSTDLNSPRK VPRRSYGEHE LQLLADNNNV  120
RARGGNDMSK LEEHGLTLIT LLFECAVAIS IDNLPEAHRM LLELTQLASP YGPSCAERVV  180
AYFAKAMASR VINSWLGISS PLVNYKSVHD AFQVFNTISP FIKFAHFTSN QAILEAFHHH  240
DRVHILDLDI MQGLQWPALF HILATRMEGP PHVRMTGMGT SSEILLETGK QLSSFARRLG  300
LSFEFLPIVR KVGEVDASMV QVQRGETLAV HWLQHSLYDA TGPDWKAMRF IEELAPRIIT  360
LVEQDMSHSG SFLDRFVGSL HYYSTMFDSL ESYLPSDNPN RHKVEHCLFY REINNILAIG  420
GPARSGEDKF RQWRGELGAR SEFVQVGMSG NSMAQAQLIL NMFPPTHGYS LVQGDGTIRL  480
GWKDTSLYVA SAWTCFHPPK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-461424938374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336159.10.0PREDICTED: protein SCARECROW-like
SwissprotQ9M3841e-138SCR_ARATH; Protein SCARECROW
TrEMBLM5VYE30.0M5VYE3_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s03740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-139GRAS family protein